Lab Knowledge Base

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===Wiki===
===Wiki===
*Welcome to the Lab Wiki for Mark Farmer's Lab.  This is the place to find procedures, news, and answers to commonly asked questions.
*Welcome to the Lab Wiki for Mark Farmer's Lab.  This is the place to find procedures, news, and answers to commonly asked questions.
-
*If you are new to this wiki, you will need an account in order to edit pages.  Talk to [[Sarah]] about getting an account set up if you would like to contribute.
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*If you are new to this wiki, you will need an account in order to edit pages.  Talk to [[Katy]] about getting an account set up if you would like to contribute.
*You can upload pictures, word, excel, and pdf documents.
*You can upload pictures, word, excel, and pdf documents.
*If you are new to wiki editing, check out the wiki help for how to edit articles in a wiki, then use the existing pages as templates and examples of how to create links, upload files, and display images.
*If you are new to wiki editing, check out the wiki help for how to edit articles in a wiki, then use the existing pages as templates and examples of how to create links, upload files, and display images.
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===Cultures & Lab Announcements===
===Cultures & Lab Announcements===
Next lab assistants meeting  
Next lab assistants meeting  
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'''Friday Sept 18th at 3:30pm'''
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'''TBA'''
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Recap of lab assistants meeting Wednesday, September 2nd at 3:30 pm
 
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*Organisms to send to MSU
 
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*Organisms with contamination: PLO
 
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*Update inventory of chemicals for MSDS binder
 
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*Updates to the Wiki
 
===Professional Enrichment===
===Professional Enrichment===
*'''The Association of Women in Sciences (AWIS)'''
*'''The Association of Women in Sciences (AWIS)'''
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== Things To Do ==  
== Things To Do ==  
=== Priority ===
=== Priority ===
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See the list of organisms needed by MSU below
 
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=== Next Lab Meeting Friday Sept 18 @ 3:30pm ===
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=== Next Lab Meeting January 14 2pm ===
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We will discuss
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*Organisms for MSU
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*Chemical inventory progress
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=== Week of Sept 14 - Sept 18 ===
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=== January ===
*If you have any questions call/email Katy
*If you have any questions call/email Katy
*Empty all tip/trash box(s)/containers on gel and molecular benches every Wed & Fri
*Empty all tip/trash box(s)/containers on gel and molecular benches every Wed & Fri
*Wipe down all molecular work benches with the [[FIX]] 70% Ethanol squirt bottle every Wed & Fri
*Wipe down all molecular work benches with the [[FIX]] 70% Ethanol squirt bottle every Wed & Fri
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*The wiki is in the updating process if you're not sure what to do see '''Are you a Lab Assistant with free time on your hands?'''  
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*Check water bath on molecular work bench if low on water please add DI H2O check every Wed & Fri
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*If you're not sure what to do see '''Are you a Lab Assistant with free time on your hands?'''
=== List of Organisms needed by MSU ===
=== List of Organisms needed by MSU ===
Please find these organisms and make an additional tube of them.  If any are not alive or contaminated please indicate below next to the three letter codes, please email Katy with any questions
Please find these organisms and make an additional tube of them.  If any are not alive or contaminated please indicate below next to the three letter codes, please email Katy with any questions
-
*CCM '''1b: xx, alive and doing well'''
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*CCM '''xx, ok'''
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*EDS '''2b: x, not moving'''  
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*EDS '''not moving'''  
*EPE  
*EPE  
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*ETM '''17a,d,f'''
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*ETM  
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*ELU '''12j: I don't know, nothing moving.'''
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*ELU '''NOTHING IN HERE'''
*HYO  
*HYO  
*KHQ  
*KHQ  
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*LXC '''13c'''
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*LXC '''x NOT MOVING'''
*PET  
*PET  
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*SXD '''4i: x, alive and moving slowly'''
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*SXD '''xx, ok, some dead'''
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*SXE  '''5f: xx-xxx, alive and ok, but a few dead'''
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*SXE  '''xx, ok, but some dead'''
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*SUL '''10h: x, alive, most moving'''
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*SUL '''xx, good'''
*TRT  
*TRT  
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*TUB '''11e: x, but alive and really well'''  
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*TUB '''xx, good, but may be CONTAMINATED'''  
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*TUV '''3f: xxx, alive and doing well'''
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*TUV '''xxx, very good'''
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*TUY '''3b: xx, alive and doing well'''
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*TUY '''xxx, very good'''
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*TUX '''12e'''
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*TUX '''xx, good'''
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*TUM '''11f: x-xx, alive and ok. Most are moving'''
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*TUM '''xx, good'''
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*TUP '''2g: xxx, alive and really well'''
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*TUP '''xxx, very good'''
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*TUO '''10c: xx, alive, really good'''
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*TUO '''xxxx, very good'''
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*LXB '''10a'''
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*LXB '''xxx, good'''
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*LXF '''1g: I don't know. almost empty, maybe contaminated, maybe dead.'''
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*LXF '''x CONTAMINATED'''
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*LXH '''1f'''
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*LXH '''xx, ok'''
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*LXJ '''9h: xx, alive and doing well'''
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*LXJ '''xx, ok'''
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*LXR '''6c: xx, alive, but are there 2 organisms in here?'''
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*LXR '''xxx, very good contam?'''
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*LXT '''6e: xx, alive and doing well'''
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*LXT '''xx, good'''
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*LYE '''7f: xx-xxx, alive and really well, but 2 organisms?'''
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*LYE '''xxx, good'''
*LYF
*LYF
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*LYI '''2d: x-xx, alive and moving, but contaminated'''
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*LYI '''xx good but contaminated'''
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*LUF '''8f: xx, alive and doing well'''
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*LUF '''xxx, very good'''
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*LUK '''9a: x, alive and ok. Some are moving, some are not.'''  
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*LUK '''xx, good'''  
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*LUT '''12f: xxx, alive, doing great'''
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*LUT '''xxx, very good'''
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*LUY '''11i: xx-xxx, alive and very well, but, 2 organisms?'''
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*LUY '''xxx, very good'''
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*TSP '''10b: xx, alive and well'''
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*TSP '''xxxx, very good'''
 +
*Organisms with no info were not found/ are not in MSU test tube rack.
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*'''Updates for Katy'''
 
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*'''Updates for Katy'''
 +
**katy, i have posted the info on how to prep and ship the cultures to MSU on this page [[Shipping Cultures Tubes to MSU]]...let me know if you have any questions '''SEJ 08Oct09'''
[[Notes for Sarah]]
[[Notes for Sarah]]

Current revision as of 18:57, 14 January 2010

Contents

News

Wiki

  • Welcome to the Lab Wiki for Mark Farmer's Lab. This is the place to find procedures, news, and answers to commonly asked questions.
  • If you are new to this wiki, you will need an account in order to edit pages. Talk to Katy about getting an account set up if you would like to contribute.
  • You can upload pictures, word, excel, and pdf documents.
  • If you are new to wiki editing, check out the wiki help for how to edit articles in a wiki, then use the existing pages as templates and examples of how to create links, upload files, and display images.


Cultures & Lab Announcements

Next lab assistants meeting TBA


Professional Enrichment

  • The Association of Women in Sciences (AWIS)

Things To Do

Priority

Next Lab Meeting January 14 2pm

January

  • If you have any questions call/email Katy
  • Empty all tip/trash box(s)/containers on gel and molecular benches every Wed & Fri
  • Wipe down all molecular work benches with the FIX 70% Ethanol squirt bottle every Wed & Fri
  • Check water bath on molecular work bench if low on water please add DI H2O check every Wed & Fri
  • If you're not sure what to do see Are you a Lab Assistant with free time on your hands?

List of Organisms needed by MSU

Please find these organisms and make an additional tube of them. If any are not alive or contaminated please indicate below next to the three letter codes, please email Katy with any questions

  • CCM xx, ok
  • EDS not moving
  • EPE
  • ETM
  • ELU NOTHING IN HERE
  • HYO
  • KHQ
  • LXC x NOT MOVING
  • PET
  • SXD xx, ok, some dead
  • SXE xx, ok, but some dead
  • SUL xx, good
  • TRT
  • TUB xx, good, but may be CONTAMINATED
  • TUV xxx, very good
  • TUY xxx, very good
  • TUX xx, good
  • TUM xx, good
  • TUP xxx, very good
  • TUO xxxx, very good
  • LXB xxx, good
  • LXF x CONTAMINATED
  • LXH xx, ok
  • LXJ xx, ok
  • LXR xxx, very good contam?
  • LXT xx, good
  • LYE xxx, good
  • LYF
  • LYI xx good but contaminated
  • LUF xxx, very good
  • LUK xx, good
  • LUT xxx, very good
  • LUY xxx, very good
  • TSP xxxx, very good
  • Organisms with no info were not found/ are not in MSU test tube rack.


  • Updates for Katy
    • katy, i have posted the info on how to prep and ship the cultures to MSU on this page Shipping Cultures Tubes to MSU...let me know if you have any questions SEJ 08Oct09

Notes for Sarah

  • Euglenozoa AToL

Are you a Lab Assistant with free time on your hands?

  • keep up with washing, drying and autoclaving the glass volumetric pipets so we don't run out (5, 10, 25mL)
  • put cotton in the tops of pasteur pipets and fill the containers (by the dishwashing station) and autoclave them
  • Make any media that needs to be made (generally AF-6 Medium, ESNW or Hay Infusion)
  • Autoclave media using the liquid cycle (be sure you label with autoclave tape)
  • Using sterile technique, add any additional ingredients to complete media post-autoclaving (eg. vitamins)
  • Wash test tubes, media containers and their respective caps (keep LIVE and FIX glassware separated)
  • Autoclave the test tubes, media containers, 9" pasteur pipets, pipet tip box(es), volumetric pipets, etc. in appropriate containers with containers underneath if available
  • Using sterile techniqe, add media to the autoclaved tubes or sterile culture flasks
  • Check and make notes of cultures without opening the tubes or culture flasks using the appropriate microscopes. Some cultures need to be checked daily, weekly, bi-weekly or monthly depending on their growth patterns.
  • Make transfers of healthy cultures (all culture information can be found on the Cumulative Culture Inventory.xls sheet on the Farmer Lab PC desktop)
    • tubes
    • big/small flasks
  • Spin down log phase cells in big culture flasks and rejuvenate with fresh media (aseptically)
  • Extract DNA from concentrated cells and update the DNA.xls sheet
  • Qualify/Quantify DNA on Nanodrop
  • Maintain molecular buffers, reagents
  • Maintain at least one carboy of DI water
  • Keep everything clean and organized
  • Ask if anyone in the lab needs anything done



Lab Binder & Notebook

Phylogenetics and Systematics of Euglenozoa

Documents



See Also

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